Without a picture, I may be not understanding, but cutting it up and starting again seems pretty drastic. Just adjust the edges to make it sit flat. As noted, sandpaper, planes, or even tablesaws can make the slight adjustments.
BTW, similar adjustments are common in drawers and frame and panel doors. Warps can happen and need to be dealt with all the time. You can minimize the chances with certain practices, but they often creep in anyway.
~ Do not seek to follow in the footsteps of the men of old; seek what they sought.