Brian,
If your sheet stock is not perfectly flat, or even if it is, store it between two thick sheets of ply. 3/4 or 5/8". And then use 2x4's on edge to clamp it together like you might clamp down a leaf press. That will help prevent a warp if it started straight. And it might reduce a warp if it developed later. Storing flat is generally better than vertical as well.
Lastly, depending on your stock, stout magnets can help hold your stock flat on the last bed if the honeycomb is steel. I use N52 magnets from KJMagnetics.com. 1/2 x 1/2 by 1" N52. The size fits easil on top of your stock and under the cone of the lens tube.
A couple of cautions though. These are vicious strong magnets and somewhat dangerous. Bare with me. First, magnets are dangerous with small kids and pets. If they swallow 2 or more they can end up in adjacent sections of the digestive track and then snap together, cutting off blood flow. Ugly things happen. And Doctors are often not cued into this as a possible. The second caution is these puppies will snap together dangerously fast and hard. They can and will shatter if allowed to do this, endangering skin if it is caught between two magnets, and endangering your eyes with flying fragments. They are really fast and strong. I keep a set of 8 (in the size I mentioned) on the left front panel of my lasers cabinet, spaced apart so they are far enough apart not to attract each other. Then I lay them on the ply as needed to hold down the sheet and remove any bend. Keep in mind how you do this too. If you are bowing from one end to another try placing it concave down. Then put your magnets in the center to pull that one point down. If you lay it concave up you have to put magnets all around the edges to pull them all down. Play and see how it goes.
A lot of folks will also use steel bars, thin enough to stay under the lens cone. That is another option and avoids flying magnets and obstructed bowels. Unless your little kid or pet is able to swallow a steel bar of course.
900x600 80watt EFR Tube laser from Liaocheng Ray Fine Tech LTD. Also a 900x600 2.5kw spindle CNC from Ray Fine. And my main tool, a well used and loved Jet 1642 Woodlathe with an outboard toolrest that helps me work from 36 inch diameters down to reallllllly tiny stuff.