I appreciate everyone's input on this. It's one of the most frustrating issues I've had to work through in the shop in a long time. The strange thing is that I've had this saw for about 8 years and never had an issue. My rips have always been glue ready. My next step is a flat fence face, but I can't see how that would be the route cause of my problems. Otherwise, I would have been having these issues all along with the original Shop Fox HDPE faces. Granted, I need the flat face (shame on me for never noticing mine wasn't), but it's not like the HDPE has suddenly moved with the weather.
Rich, I've tried swapping blades around. On the original 24T blade, I still only get marks on the lower portion of the piece and only from the back side of the blade. Also, went back to the piece I cut with the old 50T combo (that I noted earlier as not having the marks) and noticed it actually had similar marks to the 24T, just not as pronounced. So, I've basically been trying to make small changes then run through all 3 blades and at different feed rates to try and narrow down. It's not the blade to table alignment, so if it is alignment related it has to be on the fence.
The bearings is an interesting thought. I put the dial indicator on the end of the shaft and pried with a 3' length of 2x2. It deflects about .02" with a lot of force, but the deflection doesn't appear to be in the arbor bearings. I get the same deflection when prying under the arm that carries the arbor.