I cut the flutes on two stiles very neatly on the router table. They came out as nearly perfect as anything I have done. That should have tipped me off that "great things were to come". Would you believe I glued the stiles in fine. One with short flutes up, the other down.
The next pics show my corrections. My ole Dewalt router has a tendency to create a nice bulb when I plunge it. I think alignment is different when it is free than when it is locked. At any rate, since I knew that, I couldn't just slap an edge guide on aligned with the old flutes.
I built a Bill Hylton modified frame to align with the old flutes. This allowed me to set the router depth like a fixed base and tip it down. The drill rod pieces allowed me to set the 'guide plate' on them to set the frame and align it with the flutes. I had to do little to no sanding to match up the flute cuts! Yay! Two of them out of six required slight sanding.
Thanks for the help!