Just installed my new Epilog Helix 45w and have a question re acrylic. I want to engrave then cut a 4" x 6" piece.

I believe I must remove the backer paper prior to engraving, but for cutting shouldn't I place some transfer paper back on the piece so it doesn't scorch the top? Is there a way to tell the laser to pause after engraving or do I do that manually at the machine?

I guess my question is, how do most of you handle engraving and cutting within the same file?

Thanks