It is understood that both miter slots are milled in a CI tabletop at the same time on the same machine! Thus by all reason, slots will be parallel! I will qualify that statement by adding: *If the table has not otherwise distorted, or the milling operation was flawed!*
Another issue to consider: Look into your miter slots closely and you will see some very coarse mill marks. Your indicator point could be *in* or *out* of these rough spots. File the sides of your slots ever-so-slightly with a flat bastard file! Same amount of strokes on each side! See if your measurements do not improve!
In the event both slots will not accept absolutely parallel bars (such as sled runners) the right runner can be made narrower, drilled, and those spring-loaded buttons inserted to the right, to take up the inconsistency. Lots of ways to *skin the cat*!