Pat,
While the boards may well have been thicker, it too could have been shrinkage. This would depend on what kind of treated you were buying (the new stuff). Many treating processes leave the wood very saturated so a fair amount of shrinkage and movement can be expected. There are some sources that are drying the material after treating to stabilize it a bit more so these would be less apt to be drastically thicker fresh as opposed to after they've sat in the sun for a while.
If the treated you installed seemed pretty damp it may likely shrink down flush over time.
It of course could have also just been a different mill, different run, and so on, who run material slightly thicker. 1/16" in deck building is high tolerance. When working with treated, no matter how much you fuss with it its going to look bad in short order.